PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G246400.1
Common NameB456_006G246400, LOC105797991
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 221aa    MW: 25370 Da    PI: 10.0315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G246400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-0774118554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h ++Er RR++ + +++ L ++lP       +K++K +i++ A++ +++L
  Gorai.006G246400.1  74 HMMNERIRREKQKRSYSALHSMLPLG-----TKNDKNSIVQTATKRVQEL 118
                         889*********************97.....7999999999999988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1066134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-767119No hitNo description
PROSITE profilePS5088811.85269118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-574118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-774136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.007575124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDELIKQLLQ GEIFWYETKP TFVPYSNTPR QVEPGRNDGG NSENMNKKMI GFLMKSWPAT  60
VETKDGEKER CFRHMMNERI RREKQKRSYS ALHSMLPLGT KNDKNSIVQT ATKRVQELEW  120
LKKDLERRNY ELKSNHNNKI GLKVENPTSG IDSMLETLKC LKELDSNPTI IQSNFTPQQF  180
LAVLAFPTQG EAAKVEKALD RTLQETGRKL QGPRNGPTPF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483306.11e-164PREDICTED: transcription factor bHLH92
TrEMBLA0A0D2T3V61e-164A0A0D2T3V6_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.19e-43bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]